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NaturalHistoryMuseum / Repo explorer

All 190 public alphagov repositories, filterable and sortable.

All 190 public repositories. Commits, authors and file counts come from the mirrored git history; type and team come from the GOV.UK Developer Documentation where it covers the repository. Type to filter; click a column heading to sort.

Repository Language Git size Commits Authors Files Type Team Status
ALICE
Angled Label Image Capture and Extraction for high throughput insect specimen digitisation
Jupyter Notebook1.8 GB142894active docker
scratchpads2
Scratchpads 2.0
PHP751.0 MB19,2583212,179active CI docker
CliffordHerbarium-imgs
-689.5 MB723,461active
SMALL_TAGGED_GEOREF
Collection of images
-400.0 MB221,482active
IDentiBite
IDentiBite
Vue311.0 MB1532292active
scratchpads
The original Drupal 6.x Scratchpads
PHP294.2 MB3,872107,021active
HermannHerbarium-imgs
-293.8 MB211,652active
LudlowMuseumImgs
-246.8 MB711,379active
SloaneHerbarium-imgs
-244.5 MB111,259active
linnaeus
Make a big picture from many small pictures.
Python228.4 MB1264115active
ADEPT
Automated Data Extraction for Plant Traits
Python172.5 MB2972110active
ckan
CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKA
Python159.8 MB26,3344772,132active docker
lates-may-23
Python124.7 MB31777active CI
scratchpads.org
Code for scratchpads.org online promotional brochure site for the Scratchpads platform, not a sc
HTML118.1 MB27515378active
ClaytonHerbarium-imgs
Images for the Clayton Herbarium dataset on the NHM Data Portal
-100.1 MB11722active
scratchpads2-chef
Chef setup for a Scratchpads Instance
Ruby88.3 MB89751,274active
taxonworks
Workbench for biodiversity informatics.
Ruby78.1 MB19,404425,776active CI docker
ckanext-nhm
A CKAN extension for the Natural History Museum's Data Portal.
Python74.9 MB2,826272,126active CI docker
DM-ScienceUncoveredImages
A temporary folder to hold a small number of specimen images for PowerBi to access during a Scie
-72.6 MB1311,056active
plant-traits-old
Plant trait datasets
-71.3 MB132165,842active
leventis
Leventis
Jupyter Notebook62.6 MB44340active
jsc3d
Automatically exported from code.google.com/p/jsc3d
JavaScript61.1 MB199519active
scratchpads-help-files
Files and binary assets for scratchpads help wiki
-59.5 MB22237active
LeafMachine2
LeafMachine2 is a modular suite of computer vision and machine learning algorithms that enables
Python56.1 MB13341,063active docker
data-importer
Import EMu data into the NHM Data Portal
Python53.5 MB5381398active CI docker
audioblast_ingest
Provides Urban Nature Project bioacoustic data to audioblast.org.
R45.3 MB19529active
planetary-knowledge-base
Jupyter Notebook43.8 MB2727active
data-portal-feedback
Open platform to collect and prioritize product feedback
Go43.3 MB1,19043796active CI docker
vbrant.eu
PHP37.6 MB9,377283,558active
stats.scratchpads.eu
PHP37.6 MB9,39730481active
biodiversity-informatics-101
Biodiversity Informatics 101
Jupyter Notebook35.1 MB5817active
DM-ScienceUncoveredImages2
Temporary repository for specimen images for public demonstrations
-29.8 MB111986active
DuxburyCollectionImgs
-27.7 MB21411active
plant-traits
-27.6 MB23510,660active
iCollections
Specimen records from the iCollections project.
-27.4 MB325active
people-disambiguation
people disambiguation paper related code repo
Jupyter Notebook27.3 MB21345active
pelican-themes
Themes for pelican
CSS24.5 MB7802191,468active
zoa
Vue23.4 MB3871091active CI
rel-graph-data
-23.0 MB213active
predicts_www
Website for the PREDICTS project
TeX22.7 MB22510224active
inselect
Cross-platform desktop app for the segmentation and annotation of images of museum objects
Python22.4 MB1,25014286active
synthesys
Synthesys
CSS21.3 MB23356active
egg_cards
Egg card data extraction
Jupyter Notebook20.3 MB40218active
synth_transform
ETL pipeline for preparing synth data for analysis as part of DiSSCo WP1.
Jupyter Notebook20.0 MB150328active
traits
Jupyter Notebook17.3 MB71198active
PKB
Planetary Knowledge Base
Jupyter Notebook17.2 MB34329active
iiif-image-server
A IIIF Image Server
Python14.9 MB338863active CI docker
semantic-segmentation
Semantic instance segmentation of specimen images using semi-supervised learning
Jupyter Notebook14.3 MB83421active
vision
James Durrant's experimental insect analysis work
Python14.3 MB123470active
NHM-IB
Python12.7 MB2148active
gouda
Reading barcodes in complex images
Python9.2 MB157265active
library-journals
Predicting parent journal for child items
Jupyter Notebook8.7 MB4222active
phenome-10k
Python8.6 MB51612292active CI docker
inselect-SPNHC2016
Inselect workshop at SPNHC 2016, Berlin
CSS7.9 MB28135active
su2013
Touch screen slides for Science Uncovered 2013.
JavaScript7.4 MB19226active
join-the-dots-dev
This repository is intended for the development of a new Join the Dots application
Vue6.6 MB44210197active CI
smhackdown
Hot or not for museum objects
Vue6.2 MB20223active
ckanext-gallery
CKAN extension for a dataset gallery view.
Python5.4 MB25214102active CI docker
compile-frontend-actions
Frontend minification and compilation actions
JavaScript5.2 MB6741,626active
LichensOnTwigsImages
Repo to hold publicly-accessible images from the 'Lichens on Twigs' dataset + identification key
-4.9 MB71148active
ckanext-versioned-datastore
A CKAN extension providing a versioned datastore using MongoDB and Elasticsearch.
Python4.5 MB1,19410239active CI docker
ZBarWin64
Clone of the zbar library, patched for 64-bit Windows and with a wheel for 64-bit Python on Wind
C4.3 MB38211408active
ukbol
Source code for the UKBoL website
Python4.1 MB204290active CI docker
versioned-datastore-tile-server
Tile server for the versioned datastore
Python3.4 MB77524active
ckanext-spatial
Geospatial extension for CKAN
Python3.4 MB75535526archived
libdmtx-windows
Visual Studio solution for 32-bit and 64-bit DLL builds of libdmtx
C3.0 MB1,2864246active
ckanext-attribution
A CKAN extension that adds support for complex attribution.
Python2.9 MB2817144active CI docker
dmtx-wrappers
Visual Studio solution for 32-bit and 64-bit builds of the pydmtx Python package
C2.9 MB1,181578active
vertebrate-georef
Code for spatial analyses on georeferenced vertebrate type data
R2.7 MB97247active
GERTIE-DEV
GERTIE Camera System Development - 8-camera scientific imaging platform
Python2.6 MB1432129active
revile
Experimental tool for rollout photography using DSLRs and stepper motors/servos.
Python2.2 MB13318active
su2014
Transcription app for Science Uncovered 2014
JavaScript2.0 MB159338active
phthiraptera-transcription
App for transcription of phthiraptera slide data
Vue1.9 MB155472active
ckanext-versioned-tiledmap
A CKAN extension with a map view for versioned-datastore backed resources.
JavaScript1.9 MB3781397active CI docker
nhm-informatics.github.io
Blog
HTML1.7 MB272351active
raster-project
Code for projecting R models using python
Python1.7 MB5406193active docker
Symplectic-Reporting
-1.6 MB2149active
ckanext-map
Map visualisation for NHM CKAN
Python1.4 MB23310111archived
phonegap-plugin-contentsync
Download and cache remotely hosted content
C1.3 MB3682247active
portal-search-ui
A demo and dev environment for the Data Portal's new search UI.
Vue1.3 MB53844active CI
dataportal-docs
Documentation for the Natural History Museum's Data Portal
JavaScript1.2 MB55611845active
pkb-ocr
HTML986.1 kB32341active
splitgill
Versioned search library
Python952.3 kB580866active CI docker
ai-natural-sciences
CSS730.1 kB37120active
ckanext-dcat
CKAN ♥ DCAT
Python728.1 kB5153467active
extensions.ckan.org
CKAN Extensions
HTML685.1 kB22013258active
annette
Python676.9 kB237691active
retweet
Java618.5 kB17115active
gbif-name-resolution
ETL pipe to hook GBIF species API into local spreadsheets to facilitate human-in-the-loop taxono
-541.7 kB515active
nhm-windshaft-utils
JavaScript540.7 kB42146active
mali-traits
Jupyter Notebook510.0 kB1226active
senior-dev-task
TypeScript505.9 kB11121active
big-splash
Images for big splash
-495.6 kB725active
ke2mongo
Import KE EMu data into Mongo DB
Python395.3 kB457676active
calcid-transcriptions
SQLPL384.0 kB25130active
dataportal-server-provision
Provision script for dataportal servers (postgres, solr, ckan application server)
Shell384.0 kB73519active
ckanext-doi
A CKAN extension for assigning a digital object identifier (DOI) to datasets, using the DataCite
Python359.4 kB3741968active CI
specimen-globe
WebGL globe showing Museum specimens
JavaScript348.2 kB3214active
scratchpads2-solanaceaesource
Custom modules for the solanaceaesource.org Scratchpad
PHP340.0 kB2115active
nhm-windshaft-app
JavaScript331.8 kB42418active
ckanext-ldap
A CKAN extension that provides LDAP authentication.
Python325.6 kB3693761active CI
GERTIE
An 8-node distributed Raspberry Pi imaging array for pinned insect specimen digitisation.
Python324.6 kB6179active
solanaceaesource-2.0
Solanaceae Source modules for a Scratchpad 2.0 installation.
CSS323.6 kB46114active
ckanext-query-dois
A CKAN extension that creates DOIs for queries on resources.
Python319.5 kB264974active CI docker
ckantools
Utilities and common methods for CKAN extensions.
Python293.9 kB104541active CI
ckanext-statistics
A CKAN extension for accessing download and dataset statistics.
Python290.8 kB3021257active CI docker
scratchpads-evolution
Formerly called Scratchpads Re-development. Renamed to Scratchpads Evolution to represent an on
PHP285.7 kB24350active
ckanext-gbif
A CKAN extension that that connects with the GBIF API.
Python260.1 kB2241054active CI docker
flickr-slideshow
Show last image uploaded to flickr
-258.0 kB1325active
ckanext-ckanpackager
A CKAN extension that provides a user interface to download resources with ckanpackager.
Python251.9 kB2021038archived CI docker
demo-enrichment-service-image
Demo project to demonstrate the use of the Kafka queues for the enrichment services. In the exam
Python246.8 kB163862active CI docker
ckanext-graph
A CKAN extension that adds a graph view for resources.
Python240.6 kB1601055active CI docker
ckanext-twitter
A CKAN extension that enables users to post a tweet every time a dataset is created or updated.
Python227.3 kB133756archived CI docker
ckanext-contact
A CKAN extension for adding popup contact forms to pages.
Python219.1 kB2571756active CI docker
ckanpackager
A stand-alone service to pack a given CKAN resource in a ZIP file and email the link to a user.
Python215.0 kB152953archived docker
syrup
Desktop application for renaming and moving image files captured by eMesozoic
Python196.6 kB16120active
durden
The large image tiler
C++184.3 kB1014active
ckanext-userdatasets
A CKAN extension that allows organisation members to create datasets, and edit or delete the dat
Python183.3 kB1491052active CI docker
plusmoin
Daemon to monitor clusters of Postgresql servers in server/slave replication
Python180.2 kB9132active docker
dataportal_monitor
Monitoring daemon and graphite server for monitoring dataportal servers
Python176.1 kB10223active docker
ckanext-solr-heatmap
CKAN view for Solr heatmaps
JavaScript174.1 kB20646archived
ckanext-iiif
CKAN IIIF extension
Python172.0 kB167761active CI docker
ckanext-list
A CKAN extension that adds a list view for resources.
JavaScript171.0 kB148951active CI docker
join-the-dots
Join the Dots is a framework for collection descriptions and assessment data at the NHM.
-171.0 kB816active
pybossa-beetles
PyBossa application for transcribing NHM beetles (for Science Uncovered 2014)
JavaScript163.8 kB2216active
cookiecutter-ckanext
CKAN extension template
Python154.6 kB99447active docker
pyzbar
Read one-dimensional barcodes and QR codes from Python 2 and 3.
Python153.6 kB2193037active CI
scratchpads-cite
Repository for the http://cite.scratchpads.eu/ site
PHP151.6 kB10214active
libdig-task
Library digitisation import pipeline
Python147.5 kB727active
DEAN-PHD-TEXT-COLLECTOR
Python144.4 kB13222active
ckanext-status
A CKAN extension that adds a 'status' bar to the top of the page.
Python143.4 kB139852active CI docker
licences
Licenses used on Data Portal
-143.4 kB823active
nhm-windshaft-chef
Ruby143.4 kB18111active
ckanext-video
A CKAN extension for embedding Youtube or Vimeo videos as views.
Python137.2 kB123944active CI docker
ckanext-sketchfab
A CKAN extension for embedding Sketchfab models as views.
Python135.2 kB110744active CI docker
fencedine
Script used for caching of web resources. Particularly useful for caching of dynamically produce
PHP135.2 kB2412active
gbif-downloads
Count GBIF record downloads
Python135.2 kB223active
ckanext-datasolr
datasolr is a Ckan extension to use Solr for datastore queries
Python126.0 kB95720archived
GA-Into-R
Getting GA Data into R
R122.9 kB212active
api-docs
-122.9 kB312active
screenshots
Included for history. Superseded by PhantomJS!
Shell122.9 kB3819active
scratchpads2-docker
A docker setup to run a private scratchpads site
PHP118.8 kB1152331active docker
ckanext-webview
A CKAN extension for adding arbitrary URLs as resource views
Python115.7 kB98744active CI docker
pylibdmtx
Read Data Matrix barcodes from Python 2 and 3.
Python113.7 kB2133231active CI
data-portal-google-scripts-lib
Google Scripts library to work with the NHM Data Portal API
JavaScript111.6 kB53111active CI
MarkMyBird
NHM Data Portal Dataset for MarkMyBird
-103.4 kB222active
river-dolphin-convergence
Data, analyses and manuscript for river dolphin convergence paper
PLSQL103.4 kB42228active
daily-stats
Python97.3 kB147628active CI
gamc
A GBIF API MIDS Calculator
Vue91.1 kB25227active CI
ckantest
Helpers for testing CKAN extensions.
Python76.8 kB31115active
Mobilising-Collections-Biodiversity-Data
Mobilising Collection's Biodiversity Data - NatSca Workshop 2019
-73.7 kB4045active
smhackdown-api
Flask API for serving images & storing votes
Python68.6 kB13211active
hosting_scratchpads
Module which tweaks the Aegir website and makes it "Scratchpads Aegir".
PHP65.5 kB74811active
cz-nhm
Python57.3 kB4259active CI
ckanext-dataspatial
Ckan extension to enable geospatial searches within the datastore
Python52.2 kB20426archived
nhm-pyportal
Python wrapper for the Data Portal API. [needs updating!]
Python52.2 kB7226active CI
zbar-python-patched
Python wrapper for ZBar bar code library, patched for OS X, and with a wheel for 32-bit Python o
C39.9 kB10226active
scratchpad-archive
Archive a scratchpad site
JavaScript36.9 kB117active
ckanext-feedback
Feedback extension for CKAN
Python34.8 kB39415archived
pymids
Python MIDS implementation
Python33.8 kB15221active CI
DataPortalStats
Generate quarterly stats
Python28.7 kB13214active
inselect-templates
Metadata template for Inselect
-25.6 kB16111active
KEParser
Parser for KE EMu key=value export files.
Python24.6 kB2759active
ansible-ckanpackager
Ansible playbook for ckanpackager
Shell24.6 kB6213active
unpdata
Basic data about UNP
R23.6 kB17211active
UNPdummy
Send dummy UNP data to audioBLAST!
R22.5 kB7114active
recode-consultation
Open repository for public consultation on the RECODE programme requirements and community colle
-20.5 kB1412active
dataportal_test_runner
Utility for continuous running of tests on the live version of the Data Portal
Python19.5 kB18426archived
dataportal-import-provision
Provision script for dataportal import server (mongo & luigi)
Shell18.4 kB3428active
nhm-docker-ckan
CKAN Docker images for the Data Portal
Dockerfile18.4 kB21313active docker
hosting_auto_pack
Automatic pack server creation: Automatically add application/apache servers to a single pack se
-15.4 kB1345active
notebooks
Collection of jupyter notebooks
Jupyter Notebook15.4 kB225active
data-portal-deployment
Automated deployment tool for the Data Portal
Python13.3 kB16210active
specimen-chat
Specimen Chat Interface
Python13.3 kB5212active
mysql-slow
A pipeline for processing records in mysql's slow query log files, generated by Scratchpads serv
R11.3 kB2018active
scratchpad_stats
Drupal module for stats.scratchpads.eu
PHP10.2 kB2112active
taxamorph-mas
Taxamorph MAS Dissco
Python10.2 kB326active docker
cv-leaf-traits
Code for extracting leaf measurements, using LeafMachine2.
Jupyter Notebook8.2 kB515active
garden-science-papers
TeX8.2 kB712active
DMM_Development_Team_Principles
-6.1 kB851active
alkcarb
-6.1 kB1035active
ckanext-dev
CKAN extention for development tools.
Python6.1 kB739archived
uksi-importer
UKSI importer for the Data Portal
Python6.1 kB918active
misc-data-scripts
Perl4.1 kB323active
barcode-reader-dlls
Windows DLL builds of the libdmtx and zbar barcode readers
-2.0 kB311active
data-portal-issues
Data Portal issue tracker
-2.0 kB321active
data-refinery
Main repository for the Data Refinery prototype and associated projects.
-0 B000active
documentation
-0 B111active
fuse
Linked Open Data Micro-services Framework
-0 B111active
large-file-server
Data portal large file server
Python0 B223active