UK Public Sector GitHub Observatory
All 103 public repositories. Commits, authors and file counts come from the mirrored git history; type and team come from the GOV.UK Developer Documentation where it covers the repository. Type to filter; click a column heading to sort.
| Repository | Language | Git size | Commits | Authors | Files | Type | Team | Status |
|---|---|---|---|---|---|---|---|---|
| Human_Gut_Microbiome_Metagenomics_2026 Build skills in microbiome metagenomics, bioinformatics, and data interpretation to advance mate | - | 2.3 GB | 571 | 11 | 186 | active | ||
| MAVE_2025 Learn how to analyse, assess, and interpret MAVE data for clinical and research applications | Jupyter Notebook | 1.7 GB | 64 | 11 | 141 | active | ||
| Genome-Sequence-Analysis-Standardised-Resources | TeX | 504.7 MB | 74 | 3 | 990 | active | ||
| K-mer_Biodiversity_Genomics_2025 Introduction and advanced uses of k-mers in biodiversity genomics using modern k-mer tools and m | - | 492.7 MB | 68 | 9 | 62 | archived | ||
| HumanGenEpi | R | 458.6 MB | 296 | 8 | 97 | active | ||
| AMR_2026 Explore antimicrobial susceptibility testing techniques and how genomics can be applied to AMR s | HTML | 405.4 MB | 300 | 12 | 484 | active | ||
| GenEpiLAC2025 Learn how to apply genomics to epidemiological surveillance of bacterial pathogens. | HTML | 392.9 MB | 169 | 13 | 355 | active | ||
| GCV23 | Python | 362.9 MB | 50 | 6 | 132 | archived | ||
| GenEpiLAC2024 Learn how to apply genomics to epidemiological surveillance of bacterial pathogens and public he | HTML | 348.2 MB | 216 | 11 | 338 | archived | ||
| Low_Input_Epigenomics Learn the latest approaches to study chromatin biology at the gene and genome-wide levels in rar | - | 336.4 MB | 54 | 10 | 62 | active | ||
| Bacterial_Genomic_Surveillance_2026 Integrating epidemiology and genomics for surveillance and disease control | HTML | 335.7 MB | 125 | 9 | 417 | active | ||
| Fungal_Pathogen_Genomics_2025 Hands-on training in web-based data-mining resources for fungal genomes | - | 332.4 MB | 55 | 8 | 55 | archived | ||
| AMR_2025 Learn antimicrobial susceptibility testing techniques and how whole-genome sequencing and bioinf | HTML | 330.1 MB | 278 | 10 | 373 | archived | ||
| GenEpiLAC2023 Learn how to apply genomics to epidemiological surveillance of bacterial pathogens and public he | HTML | 329.1 MB | 371 | 9 | 232 | archived | ||
| Fungal_Pathogen_Genomics Hands-on training in web-based data-mining resources for fungal genomes | - | 275.4 MB | 46 | 8 | 55 | active | ||
| COG-Train_Resources cogtrain_resources | HTML | 273.7 MB | 447 | 3 | 565 | active CI | ||
| Genome_Academy_Programme The manual space for the Wellcome Connecting Science Genome Academy Event | - | 256.8 MB | 50 | 4 | 85 | active | ||
| AMR_Bacterial_Pathogens Explore antimicrobial susceptibility testing techniques and how genomics can be applied to AMR s | HTML | 239.5 MB | 32 | 4 | 341 | active | ||
| CRISPR_informatics_2025 Explore the therapeutic applications of pooled and arrayed CRISPR screens | Jupyter Notebook | 239.4 MB | 236 | 9 | 123 | active | ||
| Cancer_Genome_Analysis_2025 Learn to analyse genomics data from cancer samples with hands-on practical exercises in mutation | Roff | 235.7 MB | 99 | 11 | 90 | archived | ||
| Fungal23 Repo for the Fungal Pathogen Genomics Course | - | 229.6 MB | 61 | 5 | 20 | archived | ||
| GCM_2025 Training in molecular and genomic techniques for microbiological diagnostics and infection epide | - | 228.5 MB | 54 | 7 | 226 | archived | ||
| Helminth_Bioinformatics_2023 Practical hands-on training in helminth genome analysis. | HTML | 224.0 MB | 676 | 17 | 207 | archived | ||
| Genomics_and_Clinical_Microbiology Training in molecular and genomic techniques for microbiological diagnostics and infection epide | - | 219.6 MB | 24 | 3 | 227 | active | ||
| WWPG_2022 Working with Pathogen Genomes 2022 | Roff | 219.0 MB | 83 | 9 | 223 | active | ||
| Comp_Sys_Bio2025 From data to models to digital twins | Jupyter Notebook | 217.3 MB | 80 | 11 | 135 | active | ||
| Helminth_Bioinformatics_2025 Practical hands-on training in helminth genome analysis | HTML | 216.1 MB | 390 | 12 | 408 | archived | ||
| GCV24 Learn how to apply next-generation sequencing technologies to clinical virology | HTML | 216.1 MB | 63 | 10 | 162 | archived | ||
| GenEpi_Bacterial_Pathogen Learn how to apply genomics to epidemiological surveillance of bacterial pathogens. | HTML | 214.4 MB | 27 | 4 | 331 | active | ||
| GCV_2025 Master cutting-edge genomics and bioinformatics approaches to advance viral diagnostics and inve | Python | 199.1 MB | 143 | 11 | 159 | archived | ||
| Single_Cell_Genomics_ImmuneSys_24 Master the application of single-cell genomic approaches to explore the immune system. | Jupyter Notebook | 193.4 MB | 83 | 13 | 46 | active | ||
| NGS_Bioinformatics_2025 Hands-on lab and informatics training for long and short read sequencing | Jupyter Notebook | 190.1 MB | 112 | 6 | 45 | archived | ||
| NGS_Bioinformatics Learn to analyse next generation sequence data to address a wide range of biological questions | Jupyter Notebook | 190.1 MB | 100 | 6 | 46 | active | ||
| Cancer_Genome_Analysis Learn to analyse genomics data from cancer samples with hands-on practical exercises in mutation | Roff | 189.4 MB | 69 | 10 | 91 | active | ||
| Genomics_and_Clinical_Virology Learn how to apply next-generation sequencing technologies to clinical virology | Python | 187.7 MB | 40 | 4 | 159 | active | ||
| Cancer_Genome_Analysis_2023 Learn to analyse genomics data from cancer samples with hands-on practical exercises in mutation | HTML | 170.4 MB | 95 | 11 | 87 | archived | ||
| CRISPR_Informatics_2024 Base for the virtual informatics component of the Wellcome Connecting Science CRISPR Programme. | Jupyter Notebook | 167.9 MB | 120 | 9 | 71 | archived | ||
| CRISPR New programme of virtual and in-person courses on CRISPR and related technologies | Jupyter Notebook | 165.4 MB | 157 | 9 | 71 | active | ||
| ViralBioinfLAC2022 The repository for the Viral Genomics and Bioinformatics 2022 course | Shell | 159.2 MB | 161 | 8 | 367 | archived | ||
| RNATrans_23 | HTML | 153.2 MB | 23 | 3 | 50 | archived | ||
| LSHTM_ParasiteGenomics_2020 | Shell | 147.2 MB | 121 | 4 | 146 | archived | ||
| Molecular_Approaches_Clinical_Microbiology_2025 Discover the revolutionary potential of molecular and genomic techniques in clinical microbiolog | Shell | 146.7 MB | 74 | 6 | 172 | active | ||
| Helminth_Bioinformatics Practical hands-on training in helminth genome analysis | HTML | 145.8 MB | 11 | 4 | 201 | active | ||
| NGS_Bioinformatics_2024 Learn to analyse next generation sequence data to address a wide range of biological questions | TeX | 144.4 MB | 89 | 5 | 263 | archived | ||
| WWPG_2021 Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in | Roff | 140.0 MB | 204 | 5 | 205 | active | ||
| cancer_genome_analysis_africa | HTML | 139.7 MB | 137 | 9 | 126 | archived | ||
| KidneyGen_Africa_2026 Genetic Epidemiology of Kidney Disease in African Populations | R | 139.7 MB | 32 | 3 | 127 | active docker | ||
| Cancer_Genomic_Epidemiology_2026 Understanding Mutational Signatures of Cancer to Inform Prevention | HTML | 139.4 MB | 43 | 6 | 68 | active | ||
| PGCF-manual | SCSS | 121.8 MB | 4 | 2 | 151 | active | ||
| Comp_Sys_Bio Interactive training for functional analysis and interpretation of disease data using computatio | Jupyter Notebook | 110.6 MB | 17 | 2 | 96 | active | ||
| ClinicalGenomeASIA-HGA23 This workshop focuses on the scientific principles and tools of genomic analysis and interpretat | R | 108.5 MB | 65 | 4 | 42 | archived | ||
| ViralBioinfAsia2022 Base for the Viral Genomics and Bioinformatics Repository | Shell | 107.4 MB | 211 | 11 | 222 | archived | ||
| CompSysBio24 | Jupyter Notebook | 105.4 MB | 44 | 6 | 94 | archived | ||
| AMR-Africa-24 | Shell | 100.6 MB | 120 | 8 | 59 | archived | ||
| Association_Studies_2025 Learn the latest statistical methods and software for analysis of genetic association studies | HTML | 99.6 MB | 85 | 5 | 45 | active | ||
| NGS_Bio_Chile_23 Learn how to analyse NGS data using the latest bioinformatics tools and resources | - | 95.1 MB | 65 | 5 | 44 | archived CI | ||
| Helminths_2021 | HTML | 93.6 MB | 394 | 7 | 151 | archived | ||
| AMR-Asia-23 Learn antimicrobial susceptibility testing techniques and how whole-genome sequencing and bioinf | - | 81.7 MB | 53 | 5 | 21 | archived | ||
| AMR-Bio-Africa-2022 | Shell | 81.0 MB | 67 | 5 | 28 | archived | ||
| Molecular_Approaches_Clinical_Microbiology_2024 Discover the revolutionary potential of molecular and genomic techniques in clinical microbiolog | R | 78.5 MB | 81 | 8 | 164 | archived | ||
| genomeacademy The manual space for the Wellcome Connecting Science Genome Academy Event | Shell | 78.4 MB | 182 | 5 | 86 | archived | ||
| CompSysBio2022 | Jupyter Notebook | 74.5 MB | 75 | 9 | 76 | archived | ||
| Association_Studies_2024 Learn the latest statistical methods and software for analysis of genetic association studies | HTML | 73.2 MB | 64 | 7 | 45 | archived | ||
| Association_Studies This is the landing page for Genetic Analysis of Population-based Association Studies Course. | HTML | 72.8 MB | 99 | 7 | 44 | active | ||
| Molecular_Approaches_Clinical_Microbiology This is the landing page for Molecular & Genomic Approaches to Clinical Microbiology Course. | R | 71.9 MB | 87 | 8 | 165 | active | ||
| NGSBio_Hinx_2023 | Jupyter Notebook | 65.4 MB | 78 | 1 | 32 | archived | ||
| PRS_2025 This short course is designed to equip scientists based in Africa with the skills and knowledge | Jupyter Notebook | 63.2 MB | 124 | 14 | 145 | archived | ||
| Polygenic_Risk_Scores This is a landing page for the Polygenic Risk Scores Course Developed and Delivered by Wellcome | Jupyter Notebook | 62.4 MB | 15 | 4 | 147 | active | ||
| Protozoan_Parasite_Database_Resources_2022 Learn how to use online resources for genomic-scale data analysis of protozoan parasites | - | 60.4 MB | 90 | 6 | 33 | archived | ||
| Monogenic_Disease_AfSHG_2022 | - | 48.0 MB | 42 | 4 | 27 | archived | ||
| ACORN_ClinAMR_Lab Enhance genomic surveillance for antimicrobial resistance with hands-on laboratory and bioinform | Jupyter Notebook | 45.8 MB | 141 | 7 | 121 | archived | ||
| WCS_ACORN_Clinical_AMR This is the landing page for the training developed by Wellcome Connecting Science and ACORN for | Jupyter Notebook | 45.4 MB | 19 | 3 | 186 | active | ||
| Association_Studies_2023 Learn the latest statistical methods and software for analysis of genetic association studies | - | 41.7 MB | 70 | 6 | 36 | archived | ||
| SAGESA-AMR-Genomics-Network AMR Network Resources | - | 40.4 MB | 67 | 5 | 54 | active | ||
| T3connectResources | Jupyter Notebook | 39.4 MB | 31 | 5 | 161 | archived CI | ||
| Viral_Genomics_and_Bioinfo | Shell | 37.0 MB | 246 | 5 | 260 | active | ||
| ACORN-ClinAMR Interactive training for functional analysis and interpretation of disease data using computatio | Jupyter Notebook | 34.0 MB | 145 | 4 | 68 | archived | ||
| GCM24 Training in molecular and genomic techniques for microbiological diagnostics and infection epide | - | 20.7 MB | 46 | 5 | 105 | archived | ||
| MolAppAfrica_2023 Discover the revolutionary potential of molecular techniques in clinical microbiology for tackli | - | 17.6 MB | 48 | 6 | 95 | archived | ||
| format_convert | Jupyter Notebook | 13.8 MB | 12 | 1 | 6 | active | ||
| NGSBioAfrica_Module-1_-Intro-to-Unix-Linux | - | 13.7 MB | 4 | 2 | 15 | archived | ||
| NGS_23 Hands-on training in the latest next generation sequencing systems. | Jupyter Notebook | 13.6 MB | 47 | 2 | 23 | archived | ||
| YDMP Making stories about mentorship and career development | - | 13.5 MB | 103 | 3 | 23 | active | ||
| Single_Cell_Genomics_2025 Empowering researchers with practical strategies to overcome challenges, optimise resources, and | - | 12.3 MB | 72 | 9 | 7 | active | ||
| Single_Cell_Genomics This is the landing page for single cell genomics course | Jupyter Notebook | 12.3 MB | 73 | 13 | 15 | active | ||
| Single_Cell_Genomics_2024 Hands-on training on state-of-the-art approaches for eukaryotic single-cell RNA sequencing. | Jupyter Notebook | 12.2 MB | 44 | 6 | 14 | archived | ||
| SARS-COV-2_B4B This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course | Jupyter Notebook | 10.8 MB | 140 | 8 | 37 | archived | ||
| PRS_2024 | Shell | 7.8 MB | 261 | 9 | 102 | active | ||
| index Index for WCS course material | - | 5.5 MB | 78 | 4 | 22 | active | ||
| WCS_Informatics_Guides This repository is designed to support the training team & course attendees by providing clear a | - | 4.0 MB | 27 | 3 | 30 | active | ||
| PRS_2023 PRS Africa 2023 | R | 3.9 MB | 366 | 10 | 88 | archived | ||
| Bacterial_Meningitis_Africa_2026 Explore regionally adapted molecular and genomic techniques for tackling bacterial meningitis | - | 3.0 MB | 8 | 2 | 69 | active | ||
| Single_Cell_Community Repository for the Single Cell Genomics Latin America Community | HTML | 2.8 MB | 17 | 3 | 6 | active | ||
| Precourses_DataRepo Repository for Pre-courses Wellcome Connecting Science | Jupyter Notebook | 1.8 MB | 28 | 4 | 40 | active | ||
| Template_Course_Repo This is a Course Landing Page Template | - | 661.5 kB | 52 | 5 | 14 | active | ||
| wcs_resources a resources site for WCS courses | HTML | 622.6 kB | 12 | 1 | 42 | active CI | ||
| PGCF Pathogen Genomics Competency Framework | HTML | 212.0 kB | 22 | 2 | 6 | active | ||
| SingleCell_23 Hands-on training on the latest methodologies and applications for the analysis of nucleic acids | - | 191.5 kB | 42 | 4 | 4 | archived | ||
| .github Wellcome Connecting Science is producing open courses for genomics, bioinformatics and molecular | - | 46.1 kB | 25 | 4 | 2 | active | ||
| Scalable_Genomics_and_Pangenomics_2026 Designing scalable genomics for multi-genome and population studies | - | 42.0 kB | 8 | 2 | 14 | active | ||
| Training_Leadership_Africa_2026 A collaborative workshop to strengthen regional expertise through genomics training | - | 33.8 kB | 7 | 2 | 14 | active | ||
| African_Genomic_Diversity | - | 30.7 kB | 6 | 2 | 7 | active | ||
| Organoids23 | - | 25.6 kB | 10 | 1 | 4 | archived |