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mrc-ide / Code

40 languages, 3.3 GB of source, and what the live estate is written in today.

Language figures come from GitHub's own per-repository byte counts, which measure source rather than a single headline label. File counts and repository sizes come from the mirrors themselves. The two tell different stories, and the difference is the point.

The codebase

40
languages in use
3.3 GB of source
86.6k
files at HEAD
across every analysed repository
0 B
on disk as mirrors
full history, every branch and tag
24.2 GB
largest repository
global-lmic-reports

What stands out

One archived repository holds 27% of all the bytes.

global-lmic-reports is 24.2 GB of git - a 2013 static snapshot of www.gov.uk, not source code. It single-handedly makes HTML the largest language by volume (96% of all source bytes). Any size or language statistic that does not exclude it is measuring an archive, not a codebase.

Sizes here are GitHub's reported figures.

This organisation was harvested with blobless partial clones, which fetch every commit and file path but not file contents, so there is no local size to measure against. Checked elsewhere in this dataset against 1,526 fully mirrored repositories, GitHub's reported size is accurate to within about six percent.

Ruby is the house language, but its share is falling.

Ruby is the primary language of 0% of archived repositories but only 0% of live ones. Python, Go, TypeScript and HCL have taken the difference - the signature of a shift from monolithic Rails publishing apps toward data pipelines, infrastructure-as-code and platform tooling.

Most repositories are small; a handful are enormous.

47% of repositories are under a megabyte of git data. The estate is not a monolith - it is a very long tail of small services, gems and prototypes around a few large publishing applications.

Languages, two ways

By volume of source

Bytes of code. Dominated by archived static HTML.

HTMLHTML: 3.2 GB3.2 GBRR: 66.0 MB66.0 MBC++C++: 35.2 MB35.2 MBJupyter NotebookJupyter Notebook: 19.1 MB19.1 MBCC: 7.7 MB7.7 MBJavaJava: 4.2 MB4.2 MBTypeScriptTypeScript: 3.9 MB3.9 MBPythonPython: 2.9 MB2.9 MBTeXTeX: 1.8 MB1.8 MBJavaScriptJavaScript: 1.7 MB1.7 MBMATLABMATLAB: 1.5 MB1.5 MBKotlinKotlin: 988.2 kB988.2 kBStanStan: 581.2 kB581.2 kBCSSCSS: 517.0 kB517.0 kB

By number of repositories

How many repositories name each language as their primary one. A better guide to what engineers actually work in.

RR: 468468ShellShell: 136136HTMLHTML: 103103C++C++: 9797MakefileMakefile: 9191CSSCSS: 8383DockerfileDockerfile: 6565JavaScriptJavaScript: 6464CC: 4343PythonPython: 3737StanStan: 2828TeXTeX: 2424TypeScriptTypeScript: 2424JavaJava: 1111

Live estate versus archive

The same language ranking, split by whether the repository is still active. The shift is the clearest signal of technical direction in the whole dataset.

Active repositories

RR: 351351C++C++: 4141HTMLHTML: 3636ShellShell: 2323PythonPython: 2121TypeScriptTypeScript: 1414JavaJava: 1010CC: 88MakefileMakefile: 66DockerfileDockerfile: 88

Archived repositories

RR: 77C++C++: 22HTMLHTML: 00ShellShell: 00PythonPython: 00TypeScriptTypeScript: 00JavaJava: 00CC: 00MakefileMakefile: 22DockerfileDockerfile: 00

Scale

Repository size distribution

Git data per repository, log-ish buckets.

15211476380< 10 kB: 54< 10 kB< 100 kB: 116< 100 kB< 1 MB: 111< 1 MB< 10 MB: 152< 10 MB< 100 MB: 101< 100 MB100 MB +: 62100 MB +

Commits against files

Each circle is a repository, sized by number of distinct authors. Both axes are logarithmic. The diagonal band is the normal relationship between codebase size and churn; outliers above it are long-lived apps with heavy iteration, below it are dumps and imports.

4.2k773.6144.126.85.019.895.9939.69.2k2019-nCoV: 7 commits, 5 files, 2 authorsAMMS2022: 139 commits, 117 files, 9 authorsBobTestPackage: 16 commits, 17 files, 3 authorsBrazil-arbovirus-meteo: 21 commits, 19 files, 3 authorsBrazil_COVID19_distributions: 15 commits, 126 files, 3 authorsCOVID19_CFR_submission: 29 commits, 41 files, 4 authorsCOVID19_surveillance_sensitivity: 11 commits, 10 files, 3 authorsCOVIDCurve: 408 commits, 87 files, 6 authorsCOVID_SIR: 8 commits, 108 files, 2 authorsDENV_risk_maps: 2,215 commits, 196 files, 3 authorsDRpower: 128 commits, 163 files, 3 authorsDRpowerSite: 5 commits, 11 files, 3 authorsDSY_YF_outbreak_risk2: 5 commits, 104 files, 2 authorsDelfino: 127 commits, 57 files, 10 authorsDengue-Epidemiology-and-Transmission-Intensity: 97 commits, 20 files, 1 authorsDengue_TimorLeste: 33 commits, 19 files, 3 authorsEPIONCHO-IBM-CTS: 12 commits, 3 files, 4 authorsEPIONCHO.IBM: 255 commits, 60 files, 10 authorsEpiEstim: 1,170 commits, 158 files, 43 authorsEpiEstimApp: 481 commits, 110 files, 10 authorsForesiteExplorer: 31 commits, 11 files, 4 authorsGLAM: 51 commits, 50 files, 3 authorsGLAM-test: 58 commits, 19 files, 3 authorsGRFFmap: 153 commits, 94 files, 4 authorsGina_pkpd_trials: 13 commits, 14 files, 4 authorsHISTONCHO: 22 commits, 69 files, 2 authorsHIV_EndGame_SA: 160 commits, 197 files, 4 authorsMAP_raster_to_admin: 14 commits, 461 files, 4 authorsMINT_data_selector: 24 commits, 21 files, 2 authorsMINTe-python: 18 commits, 26 files, 3 authorsMIPanalyzer: 66 commits, 186 files, 4 authorsMMS-SD_workshop: 152 commits, 234 files, 6 authorsMMSpower: 21 commits, 23 files, 1 authorsMissingCases: 14 commits, 29 files, 3 authorsMixDiff: 477 commits, 74 files, 12 authorsNHP_in_brazil: 64 commits, 55 files, 3 authorsOverall-and-Serotype-Specific-Dengue-Transmission-Trends-in-Mexico-2016-2023: 52 commits, 27 files, 2 authorsPGEforge: 548 commits, 505 files, 32 authorsPGEhammer: 48 commits, 51 files, 6 authorsPLOS_GPH_Assessing_YF_Outbreak_Potential: 9 commits, 86 files, 2 authorsPOLICI: 11 commits, 32 files, 3 authorsPOLICI_africa_south_america: 20 commits, 26 files, 1 authorsPhyDyn: 162 commits, 140 files, 13 authorsPlasmoMAPI: 88 commits, 162 files, 3 authorsPlasmoMAPI_submission: 11 commits, 34 files, 2 authorsPlasmoSim: 75 commits, 128 files, 5 authorsR-for-IDM-Intro: 15 commits, 4 files, 2 authorsRCodingSupport: 10 commits, 104 files, 2 authorsRMAPI: 97 commits, 181 files, 6 authorsRTSS-CE: 200 commits, 94 files, 4 authorsRambler: 30 commits, 37 files, 2 authorsSA_longterm_HTS: 20 commits, 191 files, 2 authorsSGP_covid19_mental_health: 7 commits, 8 files, 2 authorsSIMPLEGEN: 295 commits, 251 files, 8 authorsSTAVE: 45 commits, 276 files, 3 authorsSriLanka_FOI: 8 commits, 6 files, 1 authorsTapestry: 177 commits, 417 files, 3 authorsVAE_PopGen: 12 commits, 16 files, 6 authorsVIMC_malaria: 157 commits, 57 files, 5 authorsVo_serology: 21 commits, 50 files, 2 authorsYEP: 417 commits, 85 files, 3 authorsYEPaux: 102 commits, 41 files, 2 authorsYF_VIMC_Burden_Orderly: 46 commits, 157 files, 1 authorsYF_WHO_risk_reports: 42 commits, 37 files, 2 authorsYF_climateChange: 149 commits, 49 files, 2 authorsYFburden: 61 commits, 31 files, 5 authorsYFestimation: 32 commits, 75 files, 2 authorsYellowFeverDynamics: 333 commits, 173 files, 2 authorsYellowFeverModelEstimation2019: 141 commits, 42 files, 2 authorsZamCovid: 66 commits, 63 files, 3 authorsZika_vaccine: 224 commits, 31 files, 2 authorsadcomp: 1,437 commits, 1,284 files, 39 authorsaloe: 61 commits, 43 files, 1 authorsalphaepi: 26 commits, 33 files, 5 authorsalphavirus-panama: 19 commits, 67 files, 3 authorsanatembea: 169 commits, 62 files, 5 authorsapothecary: 181 commits, 516 files, 7 authorsarbomap: 765 commits, 472 files, 12 authorsascertainr: 8 commits, 18 files, 2 authorsassessr: 27 commits, 22 files, 2 authorsauth-api: 12 commits, 148 files, 2 authorsautodiff_odin: 166 commits, 35 files, 4 authorsbacksearchr: 12 commits, 30 files, 1 authorsbeers: 24 commits, 24 files, 4 authorsboostr: 25 commits, 28 files, 2 authorsbootstrap4-collapse: 31 commits, 11 files, 3 authorsbroad-fungalgroup: 30 commits, 12 files, 7 authorsbuildkite-reporter-test: 10 commits, 23 files, 2 authorsbuildr: 83 commits, 32 files, 3 authorscali: 91 commits, 40 files, 4 authorscart: 24 commits, 30 files, 2 authorsccmpp.tmb: 75 commits, 40 files, 3 authorscepi_retrospective_analysis: 90 commits, 332 files, 5 authorschild_covid19_lit_review: 7 commits, 76 files, 3 authorschina-exit-covid-19: 8 commits, 86 files, 3 authorschronofix: 520 commits, 47 files, 5 authorschronofix-analysis: 213 commits, 22 files, 7 authorscinterpolate: 53 commits, 34 files, 3 authorsclimate_norovirus_litreview: 67 commits, 24 files, 1 authorscloth: 20 commits, 9 files, 1 authorscmdstanr: 2,570 commits, 369 files, 29 authorscomet: 277 commits, 132 files, 8 authorscometr: 51 commits, 223 files, 4 authorscommal: 52 commits, 25 files, 1 authorsconan: 172 commits, 54 files, 5 authorsconan2: 180 commits, 54 files, 5 authorscontact_patterns: 70 commits, 233 files, 4 authorscontents-of-care: 155 commits, 70 files, 2 authorscontext: 301 commits, 73 files, 7 authorscoop: 37 commits, 60 files, 1 authorscovfefe: 51 commits, 82 files, 1 authorscovid-19-the-economist-global-excess-deaths-model: 130 commits, 15 files, 6 authorscovid-alternative-mortality: 67 commits, 146 files, 5 authorscovid-mortality-ascertainment: 39 commits, 25 files, 6 authorscovid-sim: 2,041 commits, 229 files, 54 authorscovid-titre-efficacy: 6 commits, 20 files, 3 authorscovid-uk-mobility-report: 9 commits, 22 files, 3 authorscovid-vaccine-impact-orderly: 79 commits, 2,047 files, 5 authorscovid19-forecasts-orderly: 1,312 commits, 252 files, 16 authorscovid19-forecasts-orderly-image: 12 commits, 13 files, 6 authorscovid19-forecasts-orderly-shiny: 11 commits, 9 files, 4 authorscovid19-forecasts-orderly-web: 10 commits, 8 files, 1 authorscovid19-short-term-forecasts: 129 commits, 3,804 files, 5 authorscovid19-si: 619 commits, 109 files, 5 authorscovid19-si-orderly: 94 commits, 152 files, 4 authorscovid19-si-shiny: 19 commits, 21 files, 4 authorscovid19_South_Korea_report: 26 commits, 191 files, 2 authorscovid19_mainland_China_report: 15 commits, 3,797 files, 3 authorscovid_booster_strategies: 14 commits, 200 files, 3 authorscovid_global_impact: 69 commits, 76 files, 5 authorscovid_vaccine_allocation: 21 commits, 145 files, 3 authorscovid_vaccine_dose_analysis: 74 commits, 1,013 files, 4 authorscowflu: 298 commits, 64 files, 6 authorscsavr-mortality: 40 commits, 30 files, 1 authorscurrentsee: 128 commits, 72 files, 3 authorsdde: 361 commits, 70 files, 8 authorsdemogsurv: 100 commits, 42 files, 5 authorsdenclim: 15 commits, 14 files, 1 authorsdengue_dynamics_angola: 10 commits, 13 files, 2 authorsdengue_meta_analysis: 7 commits, 14 files, 2 authorsdengue_vaccine_comparison: 179 commits, 25 files, 3 authorsdenguetak: 36 commits, 26 files, 2 authorsdeterministic-malaria-model: 540 commits, 88 files, 33 authorsdeterministic-malaria-model-1: 245 commits, 88 files, 18 authorsdfertility: 180 commits, 60 files, 2 authorsdidehpc: 611 commits, 10 files, 13 authorsdidehpc-cmdline-tool: 18 commits, 17 files, 1 authorsdidehpc-pkgs: 37 commits, 87 files, 1 authorsdiseaseX_modelling: 320 commits, 9,203 files, 5 authorsdj11: 27 commits, 22 files, 1 authorsdocker-official-images: 6 commits, 3 files, 1 authorsdopri-js: 167 commits, 36 files, 9 authorsdrat: 392 commits, 313 files, 2 authorsdrjacoby: 481 commits, 241 files, 6 authorsdrjacoby_submission: 59 commits, 52 files, 3 authorsdrjacoby_training: 9 commits, 27 files, 2 authorsdust: 2,427 commits, 280 files, 16 authorsdust-bench: 50 commits, 81 files, 1 authorsdust-gpu-prototype: 27 commits, 26 files, 3 authorsdust-js: 117 commits, 34 files, 8 authorsdust-random-bench: 25 commits, 15 files, 2 authorsdust2: 971 commits, 212 files, 12 authorsdustgpu: 139 commits, 13 files, 2 authorsdustmpi: 36 commits, 24 files, 4 authorseasy_map_poc: 6 commits, 6 files, 1 authorseasymap: 59 commits, 56 files, 3 authorsebola_shiny: 71 commits, 4 files, 5 authorsebolasim_public: 73 commits, 28 files, 6 authorsebolasurvey: 103 commits, 395 files, 3 authorseigen1: 23 commits, 25 files, 4 authorsemu_trainer: 6 commits, 12 files, 1 authorsepicyst: 149 commits, 53 files, 6 authorsepiestims: 521 commits, 278 files, 12 authorsepireview: 1,161 commits, 159 files, 38 authorsepireview.data: 5 commits, 13 files, 1 authorsepireviewdb: 12 commits, 48 files, 2 authorseppasm: 746 commits, 94 files, 27 authorseppasm-leapfrog: 441 commits, 123 files, 13 authorsesft: 201 commits, 92 files, 6 authorsestiMINT-python: 82 commits, 43 files, 4 authorsevd-2026-outbreak-size: 12 commits, 5 files, 2 authorsexample_site_file_project: 6 commits, 21 files, 1 authorsexcalibur: 155 commits, 63 files, 3 authorsfertility-orderly-image: 12 commits, 13 files, 4 authorsfirst90release: 165 commits, 115 files, 12 authorsflodia: 160 commits, 141 files, 4 authorsforesite-orderly: 223 commits, 58 files, 2 authorsgasworks: 299 commits, 70 files, 3 authorsgavi_covid_forecast: 9 commits, 9 files, 4 authorsgenecastR: 21 commits, 58 files, 2 authorsgenescaper: 32 commits, 62 files, 3 authorsgeojsonio: 846 commits, 164 files, 19 authorsgf: 257 commits, 113 files, 30 authorsgit-example: 6 commits, 3 files, 2 authorsgit-training-biscuit: 8 commits, 2 files, 1 authorsgit-training-biscuits: 12 commits, 2 files, 2 authorsgit-workflow-demo: 19 commits, 3 files, 13 authorsgit_demo: 10 commits, 5 files, 1 authorsglobal-lmic-meffs: 18 commits, 5,222 files, 3 authorsglobal-lmic-reports: 140 commits, 4,641 files, 5 authorsglobal-lmic-reports-orderly: 1,117 commits, 90 files, 11 authorsglobal-lmic-results: 29 commits, 487 files, 5 authorsglobal_lmic_projections_esft: 9 commits, 580 files, 1 authorsglobal_raster_tools: 20 commits, 74 files, 1 authorsglodide: 13 commits, 11 files, 5 authorsgonovax: 1,584 commits, 223 files, 10 authorsgonovaxdust: 29 commits, 26 files, 4 authorsgoogle-form-post-cordova-plugin: 43 commits, 16 files, 4 authorsgrout: 148 commits, 297 files, 3 authorsgrout-deploy: 41 commits, 18 files, 3 authorsheartbeatr: 130 commits, 38 files, 6 authorshelios: 852 commits, 439 files, 16 authorshermione: 37 commits, 53 files, 4 authorshindsite: 39 commits, 84 files, 2 authorshint-adr-poc: 17 commits, 25 files, 3 authorshint-generic-chart-prototypes: 21 commits, 34 files, 3 authorshintr-loadbalancer: 21 commits, 12 files, 4 authorshintr2: 112 commits, 115 files, 2 authorshipercow: 1,282 commits, 234 files, 9 authorshipercow-api: 98 commits, 63 files, 2 authorshipercow-py: 488 commits, 82 files, 4 authorshiv-inference-website: 105 commits, 632 files, 22 authorshiv-orderly: 18 commits, 13 files, 2 authorshiv-orderly-proxy: 29 commits, 11 files, 2 authorshiv-orderly-web: 58 commits, 12 files, 5 authorshivmappr: 33 commits, 29 files, 2 authorshivmodels.net: 22 commits, 9 files, 2 authorshrp2malaRia: 29 commits, 55 files, 4 authorshsbibm: 81 commits, 128 files, 9 authorshuman_tsol_FoI_modelling: 23 commits, 18 files, 1 authorshypatia: 218 commits, 51 files, 9 authorsiccm: 135 commits, 1 files, 1 authorsicl-hbv: 21 commits, 20 files, 4 authorsicl-hbv_v2: 59 commits, 39 files, 5 authorsindia-ascertainment: 10 commits, 1,924 files, 1 authorsindividual: 846 commits, 147 files, 16 authorsindividual-test: 16 commits, 18 files, 1 authorsinfectiousdiseasemodels-2019: 70 commits, 65 files, 5 authorsinfectiousdiseasemodels-2021: 27 commits, 61 files, 6 authorsinfectiousdiseasemodels-2022: 24 commits, 63 files, 5 authorsinfectiousdiseasemodels-asiadenguesummit-2026: 14 commits, 77 files, 2 authorsinfectiousdiseasemodels-brazil: 25 commits, 68 files, 4 authorsinfectiousdiseasemodels-lusaka-2022: 16 commits, 77 files, 2 authorsinfectiousdiseasemodels-singapore: 28 commits, 47 files, 2 authorsinfectiousdiseasemodels-vietnam-2025: 23 commits, 79 files, 2 authorsinference-data: 143 commits, 108 files, 6 authorsinference-data-orderly-image: 14 commits, 13 files, 2 authorsivRmectin: 280 commits, 46 files, 7 authorsjointlyr: 11 commits, 24 files, 4 authorskelp: 55 commits, 32 files, 3 authorskp-data-shiny: 19 commits, 10 files, 2 authorskuenm: 264 commits, 141 files, 5 authorsleapfrog-hiv: 77 commits, 40 files, 4 authorsleaptfrog: 360 commits, 56 files, 7 authorslilith-test: 6 commits, 3 files, 2 authorslondonMSM_tree_simulator: 6 commits, 13 files, 4 authorslostturnip: 24 commits, 28 files, 2 authorsmalaria-orderly-image: 12 commits, 17 files, 4 authorsmalaria-orderly-web: 13 commits, 2 files, 2 authorsmalaria-sites-orderly: 23 commits, 24 files, 3 authorsmalaria-tools: 129 commits, 33 files, 4 authorsmalariaEquilibrium: 27 commits, 27 files, 5 authorsmalariaEquilibriumVivax: 65 commits, 43 files, 8 authorsmalariaModelFit: 119 commits, 126 files, 2 authorsmalaria_model_onboarding: 16 commits, 8 files, 2 authorsmalaria_mortality_SR: 7 commits, 9 files, 2 authorsmalaria_no_more: 88 commits, 31 files, 3 authorsmalaria_optimal_allocation: 6 commits, 34 files, 2 authorsmalaria_trial_pk: 375 commits, 52 files, 7 authorsmalariasimple: 77 commits, 88 files, 4 authorsmalariasimulation: 1,831 commits, 203 files, 42 authorsmalariasimulation_comp: 9 commits, 23 files, 1 authorsmalariavaxTrials: 13 commits, 41 files, 2 authorsmalariaverse: 33 commits, 47 files, 1 authorsmalsimtutorial: 68 commits, 134 files, 8 authorsmarathon: 45 commits, 33 files, 6 authorsmarkovid: 245 commits, 58 files, 6 authorsmassR21_serval: 27 commits, 5 files, 3 authorsmatchGADM: 33 commits, 54 files, 3 authorsmcstate: 1,415 commits, 129 files, 19 authorsmechanistic_yf_workshop_SI: 5 commits, 3 files, 2 authorsmemprof: 29 commits, 26 files, 3 authorsmics-datasets: 20 commits, 17 files, 3 authorsmigrate-packit--perms-from-orderly-web: 37 commits, 28 files, 2 authorsmint: 669 commits, 192 files, 16 authorsmint-deploy: 35 commits, 6 files, 5 authorsmint-emulator: 26 commits, 19 files, 5 authorsmint-emulator-api: 13 commits, 11 files, 2 authorsmint-news: 5 commits, 10 files, 4 authorsmint-v2: 610 commits, 330 files, 4 authorsmintr: 696 commits, 75 files, 17 authorsmipmapper: 55 commits, 77 files, 3 authorsmlesky-experiments: 37 commits, 29 files, 6 authorsmlscluster: 42 commits, 32 files, 2 authorsmob: 90 commits, 93 files, 4 authorsmockcpp: 19 commits, 45 files, 3 authorsmockr: 249 commits, 47 files, 7 authorsmode: 262 commits, 43 files, 7 authorsmodelapi: 10 commits, 28 files, 2 authorsmonty: 1,543 commits, 262 files, 9 authorsmoz.utils: 51 commits, 21 files, 3 authorsmpiRC: 54 commits, 102 files, 2 authorsmpox-clade1-vax-analysis: 13 commits, 166 files, 5 authorsmpox-orderly-web: 12 commits, 6 files, 1 authorsmpox-workshop-repo: 79 commits, 172 files, 9 authorsmpoxRingVax: 44 commits, 20 files, 1 authorsmpoxseir: 729 commits, 69 files, 16 authorsmpoxspam: 203 commits, 48 files, 7 authorsmrc-ide-vault: 29 commits, 8 files, 4 authorsmrc-ide.github.io: 40 commits, 41 files, 3 authorsmrc-ide.r-universe.dev: 77 commits, 1 files, 14 authorsmsc-idm-2019: 8 commits, 33 files, 2 authorsmsc-idm-2020: 22 commits, 36 files, 3 authorsmsc-idm-2021: 36 commits, 38 files, 3 authorsmsc-idm-2022: 5 commits, 38 files, 2 authorsmsc-istda-2019: 76 commits, 128 files, 8 authorsmsio: 33 commits, 26 files, 3 authorsmsvalidation: 27 commits, 9 files, 5 authorsmvw: 64 commits, 204 files, 2 authorsnaomi: 3,020 commits, 337 files, 26 authorsnaomi-dev: 9 commits, 35 files, 3 authorsnaomi-pipelines: 34 commits, 5 files, 4 authorsnaomi-troubleshooting: 12 commits, 5 files, 2 authorsnaomi.extensions: 9 commits, 30 files, 2 authorsnaomi.options: 172 commits, 49 files, 12 authorsnaomi.resources: 115 commits, 221 files, 7 authorsnaomi.utils: 198 commits, 106 files, 16 authorsnaomi.zaf: 2,690 commits, 334 files, 24 authorsnaomi1: 1,025 commits, 203 files, 11 authorsnda-examples: 5 commits, 13 files, 3 authorsnetdiagnostics: 17 commits, 43 files, 3 authorsnetz: 127 commits, 51 files, 8 authorsnimue: 223 commits, 78 files, 20 authorsnimue_global_fits: 32 commits, 370 files, 1 authorsnimue_js: 77 commits, 40 files, 8 authorsnlcali: 5 commits, 17 files, 2 authorsnode-20-docker: 32 commits, 5 files, 7 authorsnode-docker: 26 commits, 5 files, 6 authorsnoticeboard: 202 commits, 27 files, 13 authorsodin: 1,744 commits, 204 files, 18 authorsodin-dust-plots: 15 commits, 28 files, 4 authorsodin-dust-tutorial: 46 commits, 26 files, 4 authorsodin-js: 198 commits, 39 files, 6 authorsodin-monty: 343 commits, 62 files, 7 authorsodin-monty-hpru-2025: 43 commits, 19 files, 7 authorsodin-monty-pasteur-2025: 29 commits, 25 files, 2 authorsodin-monty-workshop-2025: 135 commits, 58 files, 6 authorsodin-news: 12 commits, 10 files, 2 authorsodin.api: 161 commits, 46 files, 7 authorsodin.dust: 643 commits, 57 files, 17 authorsodin.gsl: 17 commits, 10 files, 2 authorsodin.js: 210 commits, 61 files, 7 authorsodin.ui: 649 commits, 103 files, 7 authorsodin2: 955 commits, 108 files, 11 authorsom: 66 commits, 41 files, 3 authorsorderly: 1,306 commits, 252 files, 16 authorsorderly-tutorial: 32 commits, 35 files, 3 authorsorderly.db: 99 commits, 38 files, 7 authorsorderly.helper: 16 commits, 22 files, 5 authorsorderly.runner: 345 commits, 68 files, 22 authorsorderly.sharedfile: 26 commits, 26 files, 7 authorsorderly.sharepoint: 20 commits, 20 files, 4 authorsorderly_training: 25 commits, 19 files, 5 authorsoutbreakteachR: 33 commits, 52 files, 3 authorsoutpack: 21 commits, 15 files, 7 authorsoutpack-r: 609 commits, 107 files, 11 authorsoutpack.orderly: 166 commits, 35 files, 13 authorsoutpack.server: 34 commits, 39 files, 6 authorsoutpack_server: 428 commits, 79 files, 17 authorspackit: 2,549 commits, 873 files, 20 authorspackit-config: 24 commits, 5 files, 4 authorspackit-deploy: 366 commits, 50 files, 17 authorsparamap-api: 19 commits, 12 files, 3 authorsparrotmetric: 10 commits, 14 files, 3 authorspeeps: 67 commits, 33 files, 5 authorspfhrp2_sample_submission: 12 commits, 222 files, 3 authorspika: 116 commits, 45 files, 4 authorspkgbuilder: 55 commits, 35 files, 2 authorspopim: 282 commits, 77 files, 3 authorspopimconnect: 18 commits, 17 files, 2 authorspostie: 67 commits, 52 files, 4 authorsppmcmc: 17 commits, 26 files, 7 authorspriority-pathogens: 1,937 commits, 300 files, 43 authorsprivilege_walk: 18 commits, 6 files, 2 authorsprofvis: 601 commits, 175 files, 16 authorspromed-covid: 7 commits, 15 files, 2 authorsprovisionr: 167 commits, 59 files, 2 authorspublic-events-herd-immunity-mainapp: 9 commits, 28 files, 3 authorspublic-events-microbit-epidemic: 162 commits, 112 files, 3 authorspublic-events-zombie-sim-android: 10 commits, 80 files, 2 authorspublic-events-zombie-sim2-java: 21 commits, 68 files, 3 authorspyorderly: 464 commits, 144 files, 17 authorsqdenga_impact: 52 commits, 35 files, 2 authorsqueuer: 166 commits, 41 files, 7 authorsreactidd: 233 commits, 598 files, 13 authorsreestimate_covidIFR_analysis: 919 commits, 166 files, 6 authorsreferenced-TI: 6 commits, 246 files, 2 authorsremotesave: 26 commits, 26 files, 2 authorsrepatriation-covid-19: 9 commits, 3 files, 1 authorsrincewind: 61 commits, 21 files, 3 authorsring: 284 commits, 74 files, 10 authorsrminte: 32 commits, 60 files, 1 authorsrmnist: 22 commits, 18 files, 3 authorsrodent: 75 commits, 81 files, 2 authorsroundtable: 26 commits, 4 files, 1 authorsrrq: 1,071 commits, 173 files, 16 authorsrrq.kelp: 24 commits, 23 files, 3 authorsrtss_impact_cea_2021: 34 commits, 64 files, 1 authorsrtss_prioritisation: 12 commits, 87 files, 3 authorssafir: 528 commits, 219 files, 12 authorssafir2: 41 commits, 71 files, 3 authorssafir3: 11 commits, 46 files, 1 authorssarscov2-b.1.1.7: 23 commits, 76 files, 6 authorssarscov2-datastreams-england: 27 commits, 177 files, 3 authorssarscov2-multiregion: 57 commits, 64 files, 3 authorssarscov2-severity-england: 6 commits, 112 files, 3 authorsscene: 59 commits, 36 files, 3 authorsscott: 10 commits, 8 files, 3 authorsserialization: 19 commits, 53 files, 2 authorsshiny-dide: 308 commits, 12 files, 26 authorsshiny90: 768 commits, 74 files, 13 authorsshinyq: 18 commits, 6 files, 3 authorsshinyrob: 16 commits, 20 files, 2 authorsshort-course-website: 134 commits, 112 files, 6 authorsshortcourse-2019: 33 commits, 35 files, 3 authorssiR: 134 commits, 80 files, 1 authorssim: 6 commits, 12 files, 1 authorssimpleepp: 73 commits, 5 files, 3 authorssircovid: 4,153 commits, 136 files, 33 authorssircovid-gpu-hack: 65 commits, 51 files, 3 authorssircovid2: 276 commits, 79 files, 8 authorssite: 301 commits, 153 files, 13 authorsskadi: 61 commits, 1 files, 2 authorsskadi-chart: 571 commits, 36 files, 4 authorsskygrowth: 44 commits, 33 files, 8 authorssnapalette: 28 commits, 52 files, 2 authorsspam.mpxv: 16 commits, 12 files, 5 authorsspatialbranchr: 43 commits, 82 files, 3 authorsspecio: 139 commits, 157 files, 6 authorsspimalot: 1,998 commits, 153 files, 27 authorssquire: 924 commits, 201 files, 70 authorssquire.page: 142 commits, 150 files, 6 authorssquire_js: 169 commits, 31 files, 8 authorsstarmeds: 23 commits, 9 files, 2 authorsstateMINT: 57 commits, 64 files, 5 authorsstochastic-deterministic-epidemics: 32 commits, 125 files, 3 authorsstochasticity-practical: 79 commits, 33 files, 4 authorssyncr: 17 commits, 20 files, 2 authorssyria-covid-ascertainment: 10 commits, 119 files, 2 authorstb-elim: 450 commits, 304 files, 3 authorstest-wodin-builder-config: 14 commits, 32 files, 2 authorstestthat.buildkite: 15 commits, 11 files, 3 authorstfgh_retrospective_analysis: 5 commits, 412 files, 1 authorstfmpe: 125 commits, 74 files, 4 authorstfpbrowser: 382 commits, 4,248 files, 17 authorstfpscanner: 170 commits, 54 files, 9 authorsthreemc: 1,066 commits, 113 files, 8 authorsthreemc-orderly: 610 commits, 230 files, 11 authorsthreemc-orderly-image: 6 commits, 11 files, 2 authorsthreemc_example: 37 commits, 15 files, 6 authorstreasure: 140 commits, 90 files, 3 authorstwinkle: 421 commits, 51 files, 5 authorstwinkle-cli: 15 commits, 24 files, 2 authorstypochallenge: 278 commits, 37 files, 7 authorstypochallengedata: 38 commits, 7 files, 7 authorsumbrella: 104 commits, 40 files, 5 authorsus-covid19-forecasts-orderly: 95 commits, 39 files, 5 authorsvaccinequity_litreview: 42 commits, 16 files, 3 authorsvalgrindr: 7 commits, 5 files, 2 authorsvariantstring: 60 commits, 43 files, 5 authorsvimcmalaria: 147 commits, 63 files, 4 authorsviralload: 75 commits, 29 files, 5 authorsvirtual-ecology-workbench: 5 commits, 228 files, 1 authorsvivax: 66 commits, 58 files, 7 authorswastewatchR: 54 commits, 39 files, 4 authorsweave: 193 commits, 67 files, 2 authorsweighter: 11 commits, 39 files, 2 authorswelcome: 25 commits, 1 files, 3 authorswho_covid_vacc_rfp: 9 commits, 100 files, 2 authorswodin: 2,678 commits, 480 files, 17 authorswodin-buc-2023: 5 commits, 8 files, 3 authorswodin-builder-action: 16 commits, 2 files, 1 authorswodin-demo: 28 commits, 19 files, 3 authorswodin-demo-config: 18 commits, 22 files, 5 authorswodin-deploy: 45 commits, 6 files, 3 authorswodin-epimodels: 150 commits, 8 files, 10 authorswodin-gambia-idm-2023: 5 commits, 24 files, 2 authorswodin-gambia-idm-2024: 12 commits, 44 files, 4 authorswodin-malawi-idm-2022: 15 commits, 24 files, 2 authorswodin-msc-idm-2022: 19 commits, 31 files, 2 authorswodin-msc-idm-2023: 23 commits, 37 files, 3 authorswodin-msc-idm-2024: 12 commits, 37 files, 4 authorswodin-proxy: 31 commits, 14 files, 1 authorswodin-quito-workshop: 57 commits, 172 files, 7 authorswodin-royal-society: 52 commits, 38 files, 4 authorswodin-shortcourse-2023: 66 commits, 114 files, 6 authorswodin-shortcourse-2024: 14 commits, 170 files, 3 authorswodin-shortcourse-2025: 14 commits, 180 files, 4 authorswodin-static-demo: 6 commits, 11 files, 2 authorsxoshiro: 11 commits, 15 files, 2 authorszaf-circumcision-paper: 15 commits, 388 files, 1 authorsfiles at HEAD (log)commits (log)

The shape of a repository

Directory layout is the cheapest reliable signal of what a repository actually is. app/ with config/ and spec/ is a Rails application; src/ with test/ is Java or Node. Counted by how many repositories contain each top-level directory at HEAD.

Most common top-level directories

RR: 276276manman: 203203teststests: 196196srcsrc: 174174instinst: 136136datadata: 118118vignettesvignettes: 105105scriptsscripts: 105105docsdocs: 4747dockerdocker: 3939filesfiles: 3636data-rawdata-raw: 3333buildkitebuildkite: 2626appsapps: 2222defaultCodedefaultCode: 1919imagesimages: 1818R_ignoreR_ignore: 1717staticstatic: 1717

Most common file extensions

By total file count across the estate.

.rds.rds: 26.2k26.2k.r.r: 9.2k9.2k.csv.csv: 7.4k7.4k.png.png: 6.3k6.3k.html.html: 5.8k5.8k.pdf.pdf: 4.5k4.5k.rd.rd: 3.9k3.9k.json.json: 2k2k.md.md: 1.3k1.3k.h.h: 1.1k1.1k.yml.yml: 1k1k.ts.ts: 998998.docx.docx: 894894.js.js: 803803.rmd.rmd: 785785.txt.txt: 777777

The twenty largest repositories

RepositoryLanguageGit size CommitsFilesStatus
global-lmic-reportsHTML24.2 GB1404,641active
covid-vaccine-impact-orderlyR21.4 GB792,047active
global-lmic-meffsR6.5 GB185,222active
covid19-short-term-forecastsHTML5.7 GB1293,804active
nimue_global_fits-4.6 GB32370active
alphavirus-panamaR2.0 GB1967active
covid-19-the-economist-global-excess-deaths-modelR1.5 GB13015active
india-ascertainmentR1.5 GB101,924active
heliosR1.3 GB852439active
contact_patternsR1.3 GB70233active
cepi_variant_proof_vaccine_C19R1.2 GB24,858active
ivRmectinC852.5 MB28046active
VIMC_malariaHTML779.0 MB15757active
HIV_EndGame_SAC++643.1 MB160197active
diseaseX_modellingR595.1 MB3209,203active
covid-mortality-ascertainmentR549.5 MB3925active
global-lmic-reports-stagingHTML527.3 MB12,192active
covid-alternative-mortalityR515.1 MB67146active
cepi_retrospective_analysisR399.8 MB90332active
safirR365.8 MB528219active