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ukhsa-collaboration / Code

41 languages, 107.8 MB of source, and what the live estate is written in today.

Language figures come from GitHub's own per-repository byte counts, which measure source rather than a single headline label. File counts and repository sizes come from the mirrors themselves. The two tell different stories, and the difference is the point.

The codebase

41
languages in use
107.8 MB of source
57.4k
files at HEAD
across every analysed repository
0 B
on disk as mirrors
full history, every branch and tag
500.0 MB
largest repository
kmerid

What stands out

One archived repository holds 14% of all the bytes.

kmerid is 500.0 MB of git - a 2013 static snapshot of www.gov.uk, not source code. It single-handedly makes HTML the largest language by volume (22% of all source bytes). Any size or language statistic that does not exclude it is measuring an archive, not a codebase.

Sizes here are GitHub's reported figures.

This organisation was harvested with blobless partial clones, which fetch every commit and file path but not file contents, so there is no local size to measure against. Checked elsewhere in this dataset against 1,526 fully mirrored repositories, GitHub's reported size is accurate to within about six percent.

Ruby is the house language, but its share is falling.

Ruby is the primary language of 0% of archived repositories but only 4% of live ones. Python, Go, TypeScript and HCL have taken the difference - the signature of a shift from monolithic Rails publishing apps toward data pipelines, infrastructure-as-code and platform tooling.

Most repositories are small; a handful are enormous.

58% of repositories are under a megabyte of git data. The estate is not a monolith - it is a very long tail of small services, gems and prototypes around a few large publishing applications.

Languages, two ways

By volume of source

Bytes of code. Dominated by archived static HTML.

HTMLHTML: 24.2 MB24.2 MBC++C++: 19.4 MB19.4 MBJupyter NotebookJupyter Notebook: 11.2 MB11.2 MBKotlinKotlin: 9.8 MB9.8 MBC#C#: 9.6 MB9.6 MBSwiftSwift: 6.5 MB6.5 MBPythonPython: 5.9 MB5.9 MBRubyRuby: 4.2 MB4.2 MBJavaScriptJavaScript: 3.5 MB3.5 MBRR: 3.3 MB3.3 MBTypeScriptTypeScript: 2.4 MB2.4 MBCSSCSS: 2.0 MB2.0 MBJavaJava: 1.3 MB1.3 MBHCLHCL: 851.3 kB851.3 kB

By number of repositories

How many repositories name each language as their primary one. A better guide to what engineers actually work in.

PythonPython: 6363DockerfileDockerfile: 3737JavaScriptJavaScript: 2929HTMLHTML: 2727ShellShell: 2727RR: 2020CSSCSS: 1313NextflowNextflow: 1212SCSSSCSS: 1212RubyRuby: 1111Jupyter NotebookJupyter Notebook: 88HCLHCL: 88C#C#: 77TypeScriptTypeScript: 77

Live estate versus archive

The same language ranking, split by whether the repository is still active. The shift is the clearest signal of technical direction in the whole dataset.

Active repositories

PythonPython: 4545RR: 1414JavaScriptJavaScript: 99HTMLHTML: 77C#C#: 33Jupyter NotebookJupyter Notebook: 55KotlinKotlin: 11RubyRuby: 55HCLHCL: 55NextflowNextflow: 44

Archived repositories

PythonPython: 00RR: 00JavaScriptJavaScript: 11HTMLHTML: 00C#C#: 44Jupyter NotebookJupyter Notebook: 00KotlinKotlin: 44RubyRuby: 00HCLHCL: 00NextflowNextflow: 00

Scale

Repository size distribution

Git data per repository, log-ish buckets.

3828.5199.50< 10 kB: 15< 10 kB< 100 kB: 35< 100 kB< 1 MB: 38< 1 MB< 10 MB: 27< 10 MB< 100 MB: 31< 100 MB100 MB +: 7100 MB +

Commits against files

Each circle is a repository, sized by number of distinct authors. Both axes are logarithmic. The diagonal band is the normal relationship between codebase size and churn; outliers above it are long-lived apps with heavy iteration, below it are dumps and imports.

6k1.1k189.233.76.0221.5231.22.5k26.7kCOVID-19-app-Android-BETA: 1,152 commits, 452 files, 33 authorsCOVID-19-app-Documentation-BETA: 15 commits, 14 files, 3 authorsCOVID-19-app-iOS-BETA: 3,068 commits, 361 files, 37 authorsLOMA: 243 commits, 363 files, 6 authorsMOST: 31 commits, 102 files, 6 authorsMustard_and_Finnie: 153 commits, 136 files, 2 authorsPHEnix: 373 commits, 122 files, 10 authorsPneumoCaT: 129 commits, 86 files, 6 authorsPneumoKITy: 243 commits, 46 files, 14 authorsRnanoflann: 13 commits, 16 files, 4 authorsSIRA: 21 commits, 15 files, 5 authorsSOMA: 110 commits, 387 files, 2 authorsSentinel_Selection_Using_Network_Analysis: 10 commits, 13 files, 1 authorsTestResults: 11 commits, 2 files, 2 authorsUKHSA-pubhealthbench: 7 commits, 8 files, 4 authorsUKHSA_Immensa_analysis: 22 commits, 30 files, 8 authorsUKPID-Backend: 86 commits, 302 files, 6 authorsUKPID-Frontend: 34 commits, 272 files, 3 authorsactive10-backend: 447 commits, 136 files, 17 authorsactive10-cms-public: 77 commits, 355 files, 8 authorsactive10-databricks: 117 commits, 20 files, 5 authorsai-blast-genotyping: 115 commits, 29 files, 5 authorsanimal-welfare-assessment-grid: 55 commits, 651 files, 5 authorsbayesint: 28 commits, 16 files, 4 authorscherami: 300 commits, 47 files, 6 authorscore-access: 39 commits, 64 files, 6 authorscovid-19-app-android-ag-public: 62 commits, 1,980 files, 8 authorscovid-19-app-ios-ag-public: 52 commits, 2,033 files, 1 authorscovid-pass-backend: 9 commits, 539 files, 8 authorscovid-pass-letter-backend: 8 commits, 189 files, 6 authorscovid-pass-letter-frontend: 9 commits, 188 files, 6 authorscovid-pass-verifier: 44 commits, 420 files, 13 authorscovid-pass-web: 9 commits, 226 files, 6 authorscovid19-app-system-public: 61 commits, 1,433 files, 13 authorsdata_management_system: 2,556 commits, 3,150 files, 28 authorsdevops-application-cicd: 32 commits, 20 files, 2 authorsdevops-github-actions: 74 commits, 34 files, 7 authorsdevops-github-reusable-workflows: 362 commits, 26 files, 9 authorsdevops-hello-world-api: 16 commits, 29 files, 1 authorsdevops-hello-world-front: 56 commits, 31 files, 6 authorsdevops-phe-alarms-lambdas: 14 commits, 20 files, 1 authorsdevops-terraform-ci: 41 commits, 12 files, 10 authorsdevops-terraform-example-project: 112 commits, 52 files, 4 authorsdevops-terraform-modules: 355 commits, 110 files, 17 authorsdevops-terraform-public-alb: 9 commits, 11 files, 1 authorsdevops-terraform-rds-postgresql-aurora: 24 commits, 14 files, 1 authorsdevops-terraform-standard-alarms: 43 commits, 23 files, 2 authorsdevops-terraform-template: 42 commits, 62 files, 4 authorsdigital-form-builder: 4,292 commits, 1,048 files, 134 authorsemm-typing-tool: 12 commits, 11 files, 2 authorsena_submission: 63 commits, 12 files, 3 authorsepidm: 625 commits, 103 files, 16 authorsepiviz: 432 commits, 258 files, 9 authorsfastq-factory: 60 commits, 18 files, 1 authorsfingertips-open: 64 commits, 3,207 files, 6 authorsfoodscanner_compute: 67 commits, 80 files, 9 authorsfoodscanner_swaps_api: 64 commits, 101 files, 5 authorsforwardlook: 10 commits, 21 files, 2 authorsgemmm: 55 commits, 50 files, 4 authorsgene_finder: 61 commits, 16 files, 6 authorsggbreak: 24 commits, 19 files, 3 authorsgithub-pages-deploy-action: 1,342 commits, 54 files, 38 authorsgnsepinf_research_publication: 6 commits, 140 files, 1 authorsgpha-ai-mutation-library: 270 commits, 73 files, 5 authorsgpha-climb-sars-cov2-lineage-line-list: 205 commits, 20 files, 13 authorsgpha-mscape-chimera-synteny: 29 commits, 16 files, 3 authorsgpha-mscape-fastq-read-stats-nf: 6 commits, 14 files, 2 authorsgpha-mscape-hcid-refs: 8 commits, 6 files, 3 authorsgpha-mscape-nf-CSI: 11 commits, 33 files, 3 authorsgpha-mscape-nf-amr: 1,182 commits, 41 files, 5 authorsgpha-mscape-nf-contamination-reports: 247 commits, 23 files, 7 authorsgpha-mscape-nf-orange-box-public: 24 commits, 38 files, 2 authorsgpha-mscape-nf-strep-pneumo: 174 commits, 31 files, 4 authorsgpha-mscape-onyx-analysis-helper: 177 commits, 20 files, 6 authorsgpha-mscape-orangebox-claspar: 39 commits, 25 files, 4 authorsgpha-mscape-orangebox-profiler: 9 commits, 15 files, 2 authorsgpha-mscape-orangebox-virus-reclassification: 61 commits, 27 files, 2 authorsgpha-mscape-sample-qc: 105 commits, 21 files, 5 authorsgpha-mscape-taxaplease: 88 commits, 98 files, 6 authorsgpha-mscape-taxaplease-container: 44 commits, 20 files, 3 authorsgpha-tb-intreeactive: 35 commits, 41 files, 2 authorsgpha_mpox_kmer_typing: 49 commits, 30 files, 1 authorshcaidcs: 185 commits, 427 files, 7 authorsinclusive-design-team: 49 commits, 12 files, 1 authorsinclusive-design-tool: 62 commits, 138 files, 7 authorskmerid: 17 commits, 155 files, 3 authorsmind-your-ps-2021-manuscript-code: 10 commits, 27 files, 4 authorsmscape-template: 51 commits, 15 files, 4 authorsnsc-recommendationsp: 1,473 commits, 478 files, 44 authorsntbs-nhs-razor-tags: 72 commits, 205 files, 15 authorsntbs-reporting: 1,130 commits, 337 files, 32 authorsntbs_Beta: 5,964 commits, 1,028 files, 44 authorsohid-tech-docs: 130 commits, 63 files, 2 authorsphds: 14 commits, 35 files, 3 authorsphe-bioinformatics.github.io: 67 commits, 21 files, 1 authorspygom: 834 commits, 197 files, 31 authorsr-lib-actions: 1,029 commits, 26,735 files, 140 authorsrenovate: 12 commits, 6 files, 2 authorss3-sync-action: 39 commits, 5 files, 7 authorsscience-research-site: 60 commits, 227 files, 6 authorsslurm_exporter: 383 commits, 181 files, 30 authorssnapper3: 139 commits, 31 files, 1 authorssnapperdb: 243 commits, 30 files, 16 authorssnp-search: 85 commits, 33 files, 3 authorsssi-repo-test: 9 commits, 10 files, 2 authorsstandards-api: 454 commits, 133 files, 16 authorsstandards-cloud-engineering: 36 commits, 39 files, 4 authorsstandards-development: 97 commits, 51 files, 11 authorsstandards-org: 198 commits, 60 files, 6 authorsstandards-qat: 165 commits, 68 files, 8 authorsstandards-tech-radar: 46 commits, 33 files, 4 authorsstandards-template: 76 commits, 39 files, 4 authorsstandards-wow: 36 commits, 39 files, 5 authorsstatistics-production-hub: 19 commits, 82 files, 6 authorsukhsa-science-research-site: 280 commits, 285 files, 13 authorsukhsa-science-research-site-dev: 3,143 commits, 307 files, 19 authorsvariant_definitions: 69 commits, 39 files, 9 authorswithin-patient-pOXA48-conjugation: 16 commits, 15 files, 1 authorsfiles at HEAD (log)commits (log)

The shape of a repository

Directory layout is the cheapest reliable signal of what a repository actually is. app/ with config/ and spec/ is a Rails application; src/ with test/ is Java or Node. Counted by how many repositories contain each top-level directory at HEAD.

Most common top-level directories

srcsrc: 4343docsdocs: 3535teststests: 2727binbin: 1717modulesmodules: 1616scriptsscripts: 1212testtest: 1010RR: 1010datadata: 99confconf: 99examplesexamples: 88.husky.husky: 88subworkflowssubworkflows: 77liblib: 66appapp: 55gradlegradle: 55workflowsworkflows: 55.idea.idea: 55

Most common file extensions

By total file count across the estate.

.js.js: 14.9k14.9k.ts.ts: 3.8k3.8k.json.json: 3.5k3.5k.cs.cs: 3.4k3.4k.md.md: 3.3k3.3k.kt.kt: 2.9k2.9k.hpp.hpp: 1.9k1.9k.png.png: 1.8k1.8k.swift.swift: 1.7k1.7k.map.map: 1.4k1.4k.rb.rb: 1.3k1.3k.xml.xml: 1.3k1.3k.py.py: 1.3k1.3k.tgz.tgz: 958958.yml.yml: 950950.html.html: 684684

The twenty largest repositories

RepositoryLanguageGit size CommitsFilesStatus
kmeridC500.0 MB17155active
data_management_systemRuby473.9 MB2,5563,150active
snapperdbPython376.5 MB24330active
PneumoCaTPython340.9 MB12986active
gemmmPython207.3 MB5550active
snapperdb_references-158.5 MB4269active
coimeailPython123.5 MB182active
covid19-app-system-publicKotlin101.3 MB611,433archived
snp-searchRuby100.3 MB8533active
fingertips-openC#79.8 MB643,207active
foodscanner_computePHP70.7 MB6780active
ukhsa-science-research-site-devHTML69.1 MB3,143307active
LOMANextflow62.9 MB243363active
ntbs_BetaC#56.8 MB5,9641,028active
pygomJupyter Notebook49.6 MB834197active
COVID-19-app-iOS-BETAObjective-C46.1 MB3,068361archived
foodscanner_swaps_apiPHP43.2 MB64101active
covid-19-app-ios-ag-publicSwift42.7 MB522,033archived
SOMANextflow35.7 MB110387active
github-pages-deploy-actionTypeScript34.5 MB1,34254active